PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03847_BGI-A2_v1.0
Common NameF383_05170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 889aa    MW: 97727.9 Da    PI: 7.7791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03847_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18342441198
                                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                                 f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+
  Cotton_A_03847_BGI-A2_v1.0 342 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDV 423
                                 89**************************555566778***************9989999999***9.**************** PP

                                 EEEEE-SSSEE..EEEEE- CS
                          B3  80 vvFkldgrsefelvvkvfr 98 
                                 v+F++ +  +++lv+++++
  Cotton_A_03847_BGI-A2_v1.0 424 VTFSRLE-PGGKLVMGFRK 441
                                 ****665.77777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-31337449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20339441IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-22340441No hitNo description
SMARTSM010194.7E-20342443IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194342443IPR003340B3 DNA binding domain
PfamPF023629.3E-16342441IPR003340B3 DNA binding domain
PROSITE profilePS5105014.559569619IPR011124Zinc finger, CW-type
PfamPF074961.7E-12574616IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MTSTSVATSS SRICFNSVCN DLKSERPRKG WRLRTGELAE LCDRCASIYD EGRFCDTFHL  60
NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS  120
SLPERFKECS AKGWSQLTGS GPAPWRQAPG LFNSSTPQPE LHSRVPYEVD LSTGIDRLNV  180
SERLSIPSLE KKKNEDFPER LMNGSLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK  240
EDSSNPPFGL AVPYTSIDEA NGQMGVSGTP LRPNPQPSLA KQFHSNPHNG LDSSGETQMR  300
NGRPRPDGRG RNQLFPRYWP RFTDQDLQQI SADSNCIITP LFEKMLSASD AGRIGRLVLP  360
KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA  420
GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS  480
GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN  540
VVSIEGFEFE EYGDAPVLGK PTIFATDKSG ERIQWAQCED CFKWRRLPSD VLLPSKWTCS  600
SNSWDPERSS CSATQEMTAE ELENLLPHCN PAASKKMKVA KQESENVDAL EGLDTLANLA  660
ILGEGGILPA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC QTVKRRFRTL  720
MLRREKKQSQ KEADATRKKQ QPSLPDKVVD DEPLPCTTSA GNSSPNQKKV VSENLDDDTN  780
RLKSSSSPFK GQIDLNIQPE REEELSPGSD SGGTMRLLQD ASDKYHRQQS ILSSSGNSNI  840
EVTQTQPGSG TELEKINSSI DLRASHRDAD MDHPAIFPIK TFAPTSATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-1534142813102DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149023e-48JX614902.1 Gossypium hirsutum clone NBRI_GE58616 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455056.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0B0NZ890.0A0A0B0NZ89_G
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-150HSI2-like 1